Total Results: 88
Li, Weili; Wei, Ming; Liu, Lan; Lan, Jing; Wu, Chuanjie; Zhao, Wenbo; Li, Chuanhui; Chen, Jian; Hou, Chengbei; Ma, Qingfeng; Ji, Xunming
2023.
Normobaric Hyperoxia Combined with Endovascular Treatment in Patients with Acute Ischemic Stroke (OPENS-2) trial: protocol for a prospective, multicenter, randomized controlled study.
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<p>Normobaric Hyperoxia (NBO) is a potentially promising stroke treatment strategy that could protect the ischemic penumbra and could be administered as an adjunct before vascular recanalization. However, the efficacy and safety of NBO have not been confirmed by randomized controlled trials.The study aims to assess the efficacy and safety of NBO for ischemic stroke due to large artery occlusion (LVO) of acute anterior circulation among patients who had endovascular treatment (EVT) and were randomized within 6h from symptom onset. Based on the data of the modified Rankin scale (mRS) score at 90 days from the normobaric hyperoxia combined with endovascular treatment for acute ischemic stroke (OPENS: NCT03620370) trial, 284 patients will be included to achieve a 90% power by using Wilcoxon-Mann-Whitney (WMW) test and the proportional odds model to calculate the sample size. The study is a prospective, multicenter, blinded, randomized controlled trial. The NBO group is administered with mask oxygen therapy of 10L/min while the sham NBO group is with that of 1L/min. The primary outcome is the modified Rankin Scale (mRS) score at 90 days. Secondary endpoints include cerebral infarct volume at 24-48 hours, functional independence (mRS≤2) at 90 days, and improvement in neurological function at 24 hours. Safety outcomes include 90-day mortality, oxygen-related adverse events, and serious adverse events. This study will indicate whether NBO combined with EVT is superior to EVT alone for acute ischemic stroke caused by LVO in subjects randomized within 6h from symptom onset, and will provide some evidence for NBO intervention as an adjunct to thrombectomy for acute stroke.</p>
Weil, Brent R.; Murphy, Andrew J.; Liu, Qi; Howell, Rebecca M.; Smith, Susan A.; Weldon, Christopher B.; Mullen, Elizabeth A.; Madenci, Arin L.; Leisenring, Wendy M.; Neglia, Joseph P.; Turcotte, Lucie M.; Oeffinger, Kevin C.; Termuhlen, Amanda M.; Mostoufi-Moab, Sogol; Levine, Jennifer M.; Krull, Kevin R.; Yasui, Yutaka; Robison, Leslie L.; Armstrong, Gregory T.; Chow, Eric J.; Armenian, Saro H.
2023.
Late Health Outcomes Among Survivors of Wilms Tumor Diagnosed Over Three Decades: A Report From the Childhood Cancer Survivor Study.
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PURPOSETo evaluate long-term morbidity and mortality among unilateral, nonsyndromic Wilms tumor (WT) survivors according to conventional treatment regimens.METHODSCumulative incidence of late mortality (a- 5 years from diagnosis) and chronic health conditions (CHCs) were evaluated in WT survivors from the Childhood Cancer Survivor Study. Outcomes were evaluated by treatment, including nephrectomy combined with vincristine and actinomycin D (VA), VA + doxorubicin + abdominal radiotherapy (VAD + ART), VAD + ART + whole lung radiotherapy, or receipt of a- 4 chemotherapy agents.RESULTSAmong 2,008 unilateral WT survivors, 142 deaths occurred (standardized mortality ratio, 2.9, 95% CI, 2.5 to 3.5; 35-year cumulative incidence of death, 7.8%, 95% CI, 6.3 to 9.2). The 35-year cumulative incidence of any grade 3-5 CHC was 34.1% (95% CI, 30.7 to 37.5; rate ratio [RR] compared with siblings 3.0, 95% CI, 2.6 to 3.5). Survivors treated with VA alone had comparable risk for all-cause late mortality relative to the general population (standardized mortality ratio, 1.0; 95% CI, 0.5 to 1.7) and modestly increased risk for grade 3-5 CHCs compared with siblings (RR, 1.5; 95% CI, 1.1 to 2.0), but remained at increased risk for intestinal obstruction (RR, 9.4; 95% CI, 3.9 to 22.2) and kidney failure (RR, 11.9; 95% CI, 4.2 to 33.6). Magnitudes of risk for grade 3-5 CHCs, including intestinal obstruction, kidney failure, premature ovarian insufficiency, and heart failure, increased by treatment group intensity.CONCLUSIONWith approximately 40% of patients with newly diagnosed WT currently treated with VA alone, the burden of late mortality/morbidity in future decades is projected to be lower than that for survivors from earlier eras. Nevertheless, the risk of late effects such as intestinal obstruction and kidney failure was elevated across all treatment groups, and there was a dose-dependent increase in risk for all grade 3-5 CHCs by treatment group intensity.
Liang, Jingjing; Wang, Heming; Cade, Brian E; Kurniansyah, Nuzulul; He, Karen Y; Lee, Jiwon; Sands, Scott A.; Brody, Jennifer; Chen, Han; Gottlieb, Daniel J; Evans, Daniel S; Guo, Xiuqing; Gharib, Sina A; Hale, Lauren; Hillman, David R.; Lutsey, Pamela L; Mukherjee, Sutapa; Ochs-Balcom, Heather M; Palmer, Lyle J; Purcell, Shaun; Saxena, Richa; Patel, Sanjay R; Stone, Katie L; Tranah, Gregory J; Boerwinkle, Eric; Lin, Xihong; Liu, Yongmei; Psaty, Bruce M; Vasan, Ramachandran S; Manichaikul, Ani; Rich, Stephen S.; Rotter, Jerome I.; Sofer, Tamar; Redline, Susan; Zhu, Xiaofeng; Group, TOPMed Sleep Working
2022.
Targeted Genome Sequencing Identifies Multiple Rare Variants in Caveolin-1 Associated with Obstructive Sleep Apnea.
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Introduction: Obstructive sleep apnea (OSA) is a common disorder associated with increased risk for cardiovascular disease, diabetes, and premature mortality. There is strong clinical and epi-demio...
Stangl, Anne L.; Atkins, Kaitlyn; Leddy, Anna M.; Sievwright, Kirsty M.; Sevelius, Jae M.; Lippman, Sheri A.; Veras, Maria Amélia; Zamudio-Haas, Sophia; Smith, M. Kumi; Pachankis, John E.; Logie, Carmen H.; Rao, Deepa; Weiser, Sheri; Nyblade, Laura
2022.
What do we know about interventions to reduce intersectional stigma and discrimination in the context of HIV? A systematic review..
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There is ample literature on interventions to reduce human immunodeficiency virus (HIV) stigma and discrimination and extant theory around intersectionality. However, the integration of intersectionality into the design and implementation of stigma reduction interventions is nascent. Using Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines, we reviewed 23 studies from six countries to examine the state of the evidence on interventions to reduce intersectional stigma in the context of HIV. Thirteen studies made explicit reference to intersectionality, 11 of which addressed all three stigma domains: drivers, facilitators, and manifestations. Most interventions were multilevel and multistrategy, yet only five included a structural component. Thirteen studies focused on four or more intersections (e.g., HIV, race, sexual identity, gender), five on three intersections, and five on two intersections. Twenty studies (87%) reported medium (
n = 5) to high (
n = 15) community engagement. The majority of studies (19/23) assessed HIV-related (e.g., antiretroviral therapy [ART] adherence) and/or empowerment-based outcomes (e.g., self-esteem, coping), with 91% reporting some positive intervention effects. Of 13 studies that measured stigma outcomes, only seven (54%) documented some improvement in the stigma measures assessed. Our review revealed a range of sophisticated, intersectionality-informed interventions that were mostly successful at improving HIV, sexual health, and empowerment-based outcomes, but less successful at reducing the aspects of stigma measured. Future research should encompass wider geographical regions, use validated measures of intersectional stigma, and test structural interventions and approaches that challenge the systems of power and oppression that fuel stigma, inequality, and poor health outcomes among multiply marginalized populations. (PsycInfo Database Record (c) 2022 APA, all rights reserved)
(Source: journal abstract)
Saunders, Gretchen R.B.; Wang, Xingyan; Chen, Fang; Jang, Seon Kyeong; Liu, Mengzhen; Wang, Chen; Gao, Shuang; Jiang, Yu; Khunsriraksakul, Chachrit; Otto, Jacqueline M.; Addison, Clifton; Akiyama, Masato; Albert, Christine M.; Aliev, Fazil; Alonso, Alvaro; Arnett, Donna K.; Ashley-Koch, Allison E.; Ashrani, Aneel A.; Barnes, Kathleen C.; Barr, R. Graham; Bartz, Traci M.; Becker, Diane M.; Bielak, Lawrence F.; Benjamin, Emelia J.; Bis, Joshua C.; Bjornsdottir, Gyda; Blangero, John; Bleecker, Eugene R.; Boardman, Jason D.; Boerwinkle, Eric; Boomsma, Dorret I.; Boorgula, Meher Preethi; Bowden, Donald W.; Brody, Jennifer A.; Cade, Brian E.; Chasman, Daniel I.; Chavan, Sameer; Chen, Yii Der Ida; Chen, Zhengming; Cheng, Iona; Cho, Michael H.; Choquet, Hélène; Cole, John W.; Cornelis, Marilyn C.; Cucca, Francesco; Curran, Joanne E.; de Andrade, Mariza; Dick, Danielle M.; Docherty, Anna R.; Duggirala, Ravindranath; Eaton, Charles B.; Ehringer, Marissa A.; Esko, Tõnu; Faul, Jessica D.; Silva, Lilian Fernandes; Fiorillo, Edoardo; Fornage, Myriam; Freedman, Barry I.; Gabrielsen, Maiken E.; Garrett, Melanie E.; Gharib, Sina A.; Gieger, Christian; Gillespie, Nathan; Glahn, David C.; Gordon, Scott D.; Gu, Charles C.; Gu, Dongfeng; Gudbjartsson, Daniel F.; Guo, Xiuqing; Haessler, Jeffrey; Hall, Michael E.; Haller, Toomas; Harris, Kathleen Mullan; He, Jiang; Herd, Pamela; Hewitt, John K.; Hickie, Ian; Hidalgo, Bertha; Hokanson, John E.; Hopfer, Christian; Hottenga, Jouke Jan; Hou, Lifang; Huang, Hongyan; Hung, Yi Jen; Hunter, David J.; Hveem, Kristian; Hwang, Shih Jen; Hwu, Chii Min; Iacono, William; Irvin, Marguerite R.; Jee, Yon Ho; Johnson, Eric O.; Joo, Yoonjung Y.; Jorgenson, Eric; Justice, Anne E.; Kamatani, Yoichiro; Kaplan, Robert C.; Kaprio, Jaakko; Kardia, Sharon L.R.; Keller, Matthew C.; Kelly, Tanika N.; Kooperberg, Charles; Korhonen, Tellervo; Kraft, Peter; Krauter, Kenneth; Kuusisto, Johanna; Laakso, Markku; Lasky-Su, Jessica; Lee, Wen Jane; Lee, James J.; Levy, Daniel; Li, Liming; Li, Kevin; Li, Yuqing; Lin, Kuang; Lind, Penelope A.; Liu, Chunyu; Lloyd-Jones, Donald M.; Lutz, Sharon M.; Ma, Jiantao; Mägi, Reedik; Manichaikul, Ani; Martin, Nicholas G.; Mathur, Ravi; Matoba, Nana; McArdle, Patrick F.; McGue, Matt; McQueen, Matthew B.; Medland, Sarah E.; Metspalu, Andres; Meyers, Deborah A.; Millwood, Iona Y.; Mitchell, Braxton D.; Mohlke, Karen L.; Moll, Matthew; Montasser, May E.; Morrison, Alanna C.; Mulas, Antonella; Nielsen, Jonas B.; North, Kari E.; Oelsner, Elizabeth C.; Okada, Yukinori; Orrù, Valeria; Palmer, Nicholette D.; Palviainen, Teemu; Pandit, Anita; Park, S. Lani; Peters, Ulrike; Peters, Annette; Peyser, Patricia A.; Polderman, Tinca J.C.; Rafaels, Nicholas; Redline, Susan; Reed, Robert M.; Reiner, Alex P.; Rice, John P.; Rich, Stephen S.; Richmond, Nicole E.; Roan, Carol; Rotter, Jerome I.; Rueschman, Michael N.; Runarsdottir, Valgerdur; Saccone, Nancy L.; Schwartz, David A.; Shadyab, Aladdin H.; Shi, Jingchunzi; Shringarpure, Suyash S.; Sicinski, Kamil; Skogholt, Anne Heidi; Smith, Jennifer A.; Smith, Nicholas L.; Sotoodehnia, Nona; Stallings, Michael C.; Stefansson, Hreinn; Stefansson, Kari; Stitzel, Jerry A.; Sun, Xiao; Syed, Moin; Tal-Singer, Ruth; Taylor, Amy E.; Taylor, Kent D.; Telen, Marilyn J.; Thai, Khanh K.; Tiwari, Hemant; Turman, Constance; Tyrfingsson, Thorarinn; Wall, Tamara L.; Walters, Robin G.; Weir, David R.; Weiss, Scott T.; White, Wendy B.; Whitfield, John B.; Wiggins, Kerri L.; Willemsen, Gonneke; Willer, Cristen J.; Winsvold, Bendik S.; Xu, Huichun; Yanek, Lisa R.; Yin, Jie; Young, Kristin L.; Young, Kendra A.; Yu, Bing; Zhao, Wei; Zhou, Wei; Zöllner, Sebastian; Zuccolo, Luisa; Batini, Chiara; Bergen, Andrew W.; Bierut, Laura J.; David, Sean P.; Gagliano Taliun, Sarah A.; Hancock, Dana B.; Jiang, Bibo; Munafò, Marcus R.; Thorgeirsson, Thorgeir E.; Liu, Dajiang J.; Vrieze, Scott
2022.
Genetic diversity fuels gene discovery for tobacco and alcohol use.
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Tobacco and alcohol use are heritable behaviours associated with 15% and 5.3% of worldwide deaths, respectively, due largely to broad increased risk for disease and injury1–4. These substances are used across the globe, yet genome-wide association studies have focused largely on individuals of European ancestries5. Here we leveraged global genetic diversity across 3.4 million individuals from four major clines of global ancestry (approximately 21% non-European) to power the discovery and fine-mapping of genomic loci associated with tobacco and alcohol use, to inform function of these loci via ancestry-aware transcriptome-wide association studies, and to evaluate the genetic architecture and predictive power of polygenic risk within and across populations. We found that increases in sample size and genetic diversity improved locus identification and fine-mapping resolution, and that a large majority of the 3,823 associated variants (from 2,143 loci) showed consistent effect sizes across ancestry dimensions. However, polygenic risk scores developed in one ancestry performed poorly in others, highlighting the continued need to increase sample sizes of diverse ancestries to realize any potential benefit of polygenic prediction. A multi-ancestry meta-regression study analyses diverse genome-wide association studies and genome loci associated with tobacco and alcohol use.
Chaturvedi, Shruti; Antun, Ana G.; Farland, Andrew; Woods, Ryan; Metjian, Ara; Park, Yara; de Ridder, Gustaaf; Gibson, Briana; Kasthuri, Raj S; Liles, Darla K; Akwaa, Frank; Clover, Todd; Baumann Kreuziger, Lisa; Sadler, J. Evan Evan; Sridharan, Meera; Go, Ronald S.; McCrae, Keith R; Upreti, Harsh Vardhan; Liu, Angela; Lim, Ming Y; Gangaraju, Radhika; Zheng, X. Long; Raval, Jay S; Masias, Camila; Cataland, Spero R; Johnson, Andrew David; Davis, Elizabeth; Evans, Michael D; Mazepa, Marshall A.
2022.
Race, Rituximab, and Relapse in TTP.
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<p>Immune-mediated thrombotic thrombocytopenic purpura (iTTP) is characterized by recurring episodes of thrombotic microangiopathy causing ischemic organ impairment. Blacks are overrepresented in iTTP cohorts in the United States but racial disparities in iTTP outcomes and response to therapy have not been studied. Using the United States Thrombotic Microangiopathy (USTMA) Consortium iTTP Registry, we evaluated the impact of race on mortality and relapse-free survival (RFS) in confirmed iTTP in the US from 1995 to 2020. We separately examined the impact of rituximab therapy and presentation with newly diagnosed (de novo) or relapsed iTTP on RFS by race. 645 participants with 1308 iTTP episodes were available for analysis. Acute iTTP mortality did not differ by race. When all episodes of iTTP were included, Black race was associated with shorter RFS [hazard ratio (HR) of 1.60 (95% CI 1.16-2.21)]; the addition of rituximab to corticosteroids improved RFS in White [HR 0.37 (95% CI 0.18-0.73)] but not Black patients [HR 0.96 (95% CI 0.71-1.31)]. In de novo iTTP, rituximab delayed relapse, but Blacks had shorter RFS than Whites regardless of treatment. In relapsed iTTP, rituximab significantly improved RFS in White but not Black patients. Race affects overall relapse risk and response to rituximab in iTTP. Black patients may require closer monitoring, earlier retreatment, and alternative immunosuppression following rituximab treatment. How race, racism, and the social determinants of health contribute to the disparity in relapse risk in iTTP deserve further study.</p>
Do, Whitney L.; Nguyen, Steve; Yao, Jie; Guo, Xiuqing; Whitsel, Eric A.; Demerath, Ellen; Rotter, Jerome I.; Rich, Stephen S.; Lange, Leslie; Ding, Jingzhong; Van Den Berg, David; Liu, Yongmei; Justice, Anne E.; Guan, Weihua; Horvath, Steve; Assimes, Themistocles L.; Bhatti, Parveen; Jordahl, Kristina; Shadyab, Aladdin; Valencia, Celina I.; Stein, Aryeh D.; Smith, Alicia; Staimez, Lisa R.; Conneely, Karen; Narayan, K. M.Venkat
2021.
Associations between DNA methylation and BMI vary by metabolic health status: a potential link to disparate cardiovascular outcomes.
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Background: Body mass index (BMI), a well-known risk factor for poor cardiovascular outcomes, is associated with differential DNA methylation (DNAm). Similarly, metabolic health has also been associated with changes in DNAm. It is unclear how overall metabolic health outside of BMI may modify the relationship between BMI and methylation profiles, and what consequences this may have on downstream cardiovascular disease. The purpose of this study was to identify cytosine-phosphate-guanine (CpG) sites at which the association between BMI and DNAm could be modified by overall metabolic health. Results: The discovery study population was derived from three Women’s Health Initiative (WHI) ancillary studies (n = 3977) and two Atherosclerosis Risk in Communities (ARIC) ancillary studies (n = 3520). Findings were validated in the Multi-Ethnic Study of Atherosclerosis (MESA) cohort (n = 1200). Generalized linear models regressed methylation β values on the interaction between BMI and metabolic health Z score (BMI × MHZ) adjusted for BMI, MHZ, cell composition, chip number and location, study characteristics, top three ancestry principal components, smoking, age, ethnicity (WHI), and sex (ARIC). Among the 429,566 sites examined, differential associations between BMI × MHZ and DNAm were identified at 22 CpG sites (FDR q < 0.05), with one site replicated in MESA (cg18989722, in the TRAPPC9 gene). Three of the 22 sites were associated with incident coronary heart disease (CHD) in WHI. For each 0.01 unit increase in DNAm β value, the risk of incident CHD increased by 9% in one site and decreased by 6–10% in two sites over 25 years. Conclusions: Differential associations between DNAm and BMI by MHZ were identified at 22 sites, one of which was validated (cg18989722) and three of which were predictive of incident CHD. These sites are located in several genes related to NF-kappa-B signaling, suggesting a potential role for inflammation between DNA methylation and BMI-associated metabolic health.
Saunders, Gretchen R.B.; Liu, Mengzhen; Vrieze, Scott; McGue, Matthew; Iacono, William G
2021.
Mechanisms of parent-child transmission of tobacco and alcohol use with polygenic risk scores: Evidence for a genetic nurture effect.
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Parent-child similarity is a function of genetic and environmental transmission. In addition, genetic effects not transmitted to offspring may drive parental behavior, thereby affecting the rearing environment of the child. Measuring genetic proclivity directly, through polygenic risk scores (PRSs), provides a way to test for the effect of nontransmitted parental genotype, on offspring outcome, termed a genetic nurture effect-in other words, if and how parental genomes might affect their children through the environment. The current study used polygenic risk scores for smoking initiation, cigarettes per day, and drinks per week to predict substance use in a sample of 3,008 twins, assessed prospectively from age 17-29, and their parents, from the Minnesota Center for Twin and Family Research. Mixed-effects models were used to test for a genetic nurture effect whereby parental PRSs predict offspring tobacco and alcohol use after statistically adjusting for offspring's own PRS. Parental smoking initiation PRS predicted offspring cigarettes per day at age 24 (β = .103, 95% CI [.03, .17]) and alcohol use at age 17 (β = .091, 95% CI [.04, .14]) independent of shared genetics. There was also a suggestive independent association between the parent PRS and offspring smoking at age 17 (β = .096; 95% CI [.02, .17]). Mediation analyses provided some evidence for environmental effects of parental smoking, alcohol use, and family socioeconomic status. These findings, and more broadly the molecular genetic method used, have implications on the identification of environmental effects on developmental outcomes such as substance use. (PsycInfo Database Record (c) 2021 APA, all rights reserved).
Li, Jianfu; Zhou, Yujia; Jiang, Xiaoqian; Natarajan, Karthik V.; Pakhomov, Serguei; Liu, Hongfang; Xu, Hua
2021.
Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition.
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Objective: : Developing clinical natural language processing systems often requires access to many clinical documents, which are not widely available to the public due to privacy and security concerns. To address this challenge, we propose to develop methods to generate synthetic clinical notes and evaluate their utility in real clinical natural language processing tasks. Materials and Methods: : We implemented 4 state-of-the-art text generation models, namely CharRNN, Seg-GAN, GPT-2, and CTRL, to generate clinical text for the History and Present Illness section. We then manually annotated clinical entities for randomly selected 500 History and Present Illness notes generated from the best-performing algorithm. To compare the utility of natural and synthetic corpora, we trained named entity recognition (NER) models from all 3 corpora and evaluated their performance on 2 independent natural corpora. Results: : Our evaluation shows GPT-2 achieved the best BLEU (bilingual evaluation understudy) score (with a BLEU-2 of 0.92). NER models trained on synthetic corpus generated by GPT-2 showed slightly better performance on 2 independent corpora: strict F1 scores of 0.709 and 0.748, respectively, when compared with the NER models trained on natural corpus (F1 scores of 0.706 and 0.737, respectively), indicating the good utility of synthetic corpora in clinical NER model development. In addition, we also demonstrated that an augmented method that combines both natural and synthetic corpora achieved better performance than that uses the natural corpus only. Conclusions: : Recent advances in text generation have made it possible to generate synthetic clinical notes that could be useful for training NER models for information extraction from natural clinical notes, thus lowering the privacy concern and increasing data availability. Further investigation is needed to apply this technology to practice.
Convertino, Matteo; Reddy, A.; Liu, Y; Munoz-Zanzi, C.
2021.
Eco-epidemiological scaling of Leptospirosis: Vulnerability mapping and early warning forecasts.
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Infectious disease epidemics are plaguing the world and a lot of research is focused on the development of models to reproduce disease dynamics for eco-environmental and biological investigation, and disease management. Leptospirosis is an example of a neglected zoonosis strongly mediated by ecohydrological dynamics with emerging endemic and epidemic patterns worldwide in both animal and human populations. By accounting for large heterogeneities of affected areas we show how exponential endemics and scale-free epidemics are largely predictable and linked to common socio-environmental features via scaling laws with different exponents that inform about vulnerability factors. This led to the development of a novel pattern-oriented integrated model that can be used as an early-warning signal (EWS) tool for endemic-epidemic regime classification, risk determinant attribution, and near real-time forecast of outbreaks. Forecasts are grounded on expected outbreak recurrence time dependent on exceedance probabilities and statistical EWS that sense outbreak onset. A stochastic spatially-explicit model is shown to comprehensively predict outbreak dynamics (early sensing, timing, magnitude, decay, and eco-environmental determinants) and derive a spreading factor characterizing endemics and epidemics, where average over maximum rainfall is the critical factor characterizing disease transitions. Dynamically, case cross-correlation considering neighboring communities senses 2-weeks in advance outbreaks. Eco-environmental scaling relationships highlight how predicted host suitability and topographic index can be used as epidemiological footprints to effectively distinguish and control Leptospirosis regimes and areas dependent on hydro-climatological dynamics as the main trigger. The spatio-temporal scale-invariance of epidemics – underpinning persistent criticality and neutrality or independence among areas – is emphasized by the high accuracy in reproducing sequence and magnitude of cases via reliable surveillance. Further investigations of robustness and universality of eco-environmental determinants are required; nonetheless a comprehensive and computationally simple EWS method for the full characterization of Leptospirosis is provided. The tool is extendable to other climate-sensitive zoonoses to define vulnerability factors and predict outbreaks useful for optimal disease risk prevention and control.
Graff, Mariaelisa; Justice, Anne E.; Young, Kristin L.; Marouli, Eirini; Zhang, Xinruo; Fine, Rebecca S.; Lim, Elise; Buchanan, Victoria; Rand, Kristin; Feitosa, Mary F.; Wojczynski, Mary K.; Yanek, Lisa R.; Shao, Yaming; Rohde, Rebecca; Adeyemo, Adebowale A.; Aldrich, Melinda C.; Allison, Matthew A.; Ambrosone, Christine B.; Ambs, Stefan; Amos, Christopher; Arnett, Donna K.; Atwood, Larry; Bandera, Elisa V.; Bartz, Traci; Becker, Diane M.; Berndt, Sonja I.; Bernstein, Leslie; Bielak, Lawrence F.; Blot, William J.; Bottinger, Erwin P.; Bowden, Donald W.; Bradfield, Jonathan P.; Brody, Jennifer A.; Broeckel, Ulrich; Burke, Gregory; Cade, Brian E.; Cai, Qiuyin; Caporaso, Neil E.; Carlson, Chris; Carpten, John; Casey, Graham; Chanock, Stephen J.; Chen, Guanjie; Chen, Minhui; Chen, Yii Der Ida; Chen, Wei Min; Chesi, Alessandra; Chiang, Charleston; Chu, Lisa; Coetzee, Gerry A.; Conti, David V.; Cooper, Richard S.; Cushman, Mary; Demerath, Ellen W.; Deming, Sandra L.; Dimitrov, Latchezar; Ding, Jingzhong; Diver, W. Ryan; Duan, Qing; Evans, Michael; Falusi, Adeyinka G.; Faul, Jessica D.; Fornage, Myriam; Fox, Caroline; Freedman, Barry I.; Garcia, Melissa; Gillanders, Elizabeth M.; Goodman, Phyllis; Gottesman, Omri; Grant, Struan F.A.; Guo, Xiuqing; Hakonarson, Hakon; Haritunians, Talin; Harris, Tamara B.; Harris, Curtis C.; Henderson, Brian E.; Hennis, Anselm; Hernandez, Dena G.; Hirschhorn, Joel N.; McNeill, Lorna Haughton; Howard, Timothy D.; Howard, Barbara; Hsing, Ann W.; Hsu, Yu Han H.; Hu, Jennifer J.; Huff, Chad D.; Huo, Dezheng; Ingles, Sue A.; Irvin, Marguerite R.; John, Esther M.; Johnson, Karen C.; Jordan, Joanne M.; Kabagambe, Edmond K.; Kang, Sun J.; Kardia, Sharon L.; Keating, Brendan J.; Kittles, Rick A.; Klein, Eric A.; Kolb, Suzanne; Kolonel, Laurence N.; Kooperberg, Charles; Kuller, Lewis; Kutlar, Abdullah; Lange, Leslie A.; Langefeld, Carl D.; Le Marchand, Loic; Leonard, Hampton; Lettre, Guillaume; Levin, Albert M.; Li, Yun; Li, Jin; Liu, Yongmei; Liu, Youfang; Liu, Simin; Lohman, Kurt; Lotay, Vaneet; Lu, Yingchang; Maixner, William; Manson, Jo Ann E.; McKnight, Barbara; Meng, Yan; Monda, Keri L.; Monroe, Kris; Moore, Jason H.; Mosley, Thomas H.; Mudgal, Poorva; Murphy, Adam B.; Nadukuru, Rajiv; Nalls, Mike A.; Nathanson, Katherine L.; Nayak, Uma; N'Diaye, Amidou; Nemesure, Barbara; Neslund-Dudas, Christine; Neuhouser, Marian L.; Nyante, Sarah; Ochs-Balcom, Heather; Ogundiran, Temidayo O.; Ogunniyi, Adesola; Ojengbede, Oladosu; Okut, Hayrettin; Olopade, Olufunmilayo I.; Olshan, Andrew; Padhukasahasram, Badri; Palmer, Julie; Palmer, Cameron D.; Palmer, Nicholette D.; Papanicolaou, George; Patel, Sanjay R.; Pettaway, Curtis A.; Peyser, Patricia A.; Press, Michael F.; Rao, D. C.; Rasmussen-Torvik, Laura J.; Redline, Susan; Reiner, Alex P.; Rhie, Suhn K.; Rodriguez-Gil, Jorge L.; Rotimi, Charles N.; Rotter, Jerome I.; Ruiz-Narvaez, Edward A.; Rybicki, Benjamin A.; Salako, Babatunde; Sale, Michele M.; Sanderson, Maureen; Schadt, Eric; Schreiner, Pamela J.; Schurmann, Claudia; Schwartz, Ann G.; Shriner, Daniel A.; Signorello, Lisa B.; Singleton, Andrew B.; Siscovick, David S.; Smith, Jennifer A.; Smith, Shad; Speliotes, Elizabeth K.; Spitz, Margaret; Stanford, Janet L.; Stevens, Victoria L.; Stram, Alex; Strom, Sara S.; Sucheston, Lara; Sun, Yan V.; Tajuddin, Salman M.; Taylor, Herman; Taylor, Kira; Tayo, Bamidele O.; Thun, Michael J.; Tucker, Margaret; Vaidya, Dhananjay; Van Den Berg, David J.; Vedantam, Sailaja; Vitolins, Mara Z.; Wang, Zhaoming; Ware, Erin B.; Wassertheil-Smoller, Sylvia; Weir, David R.; Wiencke, John K.; Williams, Scott M.; Williams, L. Keoki; Wilson, James G.; Witte, John S.; Wrensch, Margaret R.; Wu, Xifeng; Yao, Jie; Zakai, Neil; Zanetti, Krista; Zemel, Babette S.; Zhao, Wei; Zhao, Jing Hua; Zheng, Wei; Zhi, Degui; Zhou, Jie; Zhu, Xiaofeng; Ziegler, Regina G.; Zmuda, Joe; Zonderman, Alan B.; Psaty, Bruce M; Borecki, Ingrid B.; Cupples, L. Adrienne; Liu, Ching Ti; Haiman, Christopher A.; Loos, Ruth J.F.; Ng, Maggie C.Y.; North, Kari E.
2021.
Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.
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Although many loci have been associated with height in European ancestry populations, very few have been identified in African ancestry individuals. Furthermore, many of the known loci have yet to be generalized to and fine-mapped within a large-scale African ancestry sample. We performed sex-combined and sex-stratified meta-analyses in up to 52,764 individuals with height and genome-wide genotyping data from the African Ancestry Anthropometry Genetics Consortium (AAAGC). We additionally combined our African ancestry meta-analysis results with published European genome-wide association study (GWAS) data. In the African ancestry analyses, we identified three novel loci (SLC4A3, NCOA2, ECD/FAM149B1) in sex-combined results and two loci (CRB1, KLF6) in women only. In the African plus European sex-combined GWAS, we identified an additional three novel loci (RCCD1, G6PC3, CEP95) which were equally driven by AAAGC and European results. Among 39 genome-wide significant signals at known loci, conditioning index SNPs from European studies identified 20 secondary signals. Two of the 20 new secondary signals and none of the 8 novel loci had minor allele frequencies (MAF) < 5%. Of 802 known European height signals, 643 displayed directionally consistent associations with height, of which 205 were nominally significant (p < 0.05) in the African ancestry sex-combined sample. Furthermore, 148 of 241 loci contained ≤20 variants in the credible sets that jointly account for 99% of the posterior probability of driving the associations. In summary, trans-ethnic meta-analyses revealed novel signals and further improved fine-mapping of putative causal variants in loci shared between African and European ancestry populations.
Siriruchatanon, Mutita; Liu, Shan; Carlucci, James G.; Enns, Eva A.; Duarte, Horacio A.
2021.
Addressing pediatric hiv pretreatment drug resistance and virologic failure in sub-saharan africa: A cost-effectiveness analysis of diagnostic-based strategies in children ≥3 years old.
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Improvement of antiretroviral therapy (ART) regimen switching practices and implementation of pretreatment drug resistance (PDR) testing are two potential approaches to improve health outcomes for children living with HIV. We developed a microsimulation model of disease progression and treatment focused on children with perinatally acquired HIV in sub-Saharan Africa who initiate ART at 3 years of age. We evaluated the cost-effectiveness of diagnostic-based strategies (improved switching and PDR testing), over a 10-year time horizon, in settings without and with pediatric dolutegravir (DTG) availability as first-line ART. The improved switching strategy increases the probability of switching to second-line ART when virologic failure is diagnosed through viral load testing. The PDR testing strategy involves a one-time PDR test prior to ART initiation to guide choice of initial regimen. When DTG is not available, PDR testing is dominated by the improved switching strategy, which has an incremental cost-effectiveness ratio (ICER) of USD 579/life-year gained (LY), relative to the status quo. If DTG is available, improved switching has a similar ICER (USD 591/LY) relative to the DTG status quo. Even when substantial financial investment is needed to achieve improved regimen switching practices, the improved switching strategy still has the potential to be cost-effective in a wide range of sub-Saharan African countries. Our analysis highlights the importance of strengthening existing laboratory monitoring systems to improve the health of children living with HIV.
Liu, Lan; Li, Wei; Su, Zhihua; Cook, Dennis; Vizioli, Luca; Yacoub, Essa
2021.
Efficient estimation via envelope chain in <scp>MRI</scp> ‐based studies.
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Yang, Aimei; Choi, Ian Myoungsu; Abeliuk, Andrés; Saffer, Adam J.
2021.
The Influence of Interdependence in Networked Publics Spheres: How Community-Level Interactions Affect the Evolution of Topics in Online Discourse.
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Investigations of networked public spheres often examine the structures of online platforms by studying users' interactions. These works suggest that users' interactions can lead to cyberbalkani-zation when interlocutors form homophilous communities that typically have few connections to others with opposing ideologies. Yet, rather than assuming communities are isolated, this study examines community-level interactions to reveal how communities in online discourses are more interdependent than previously theorized. Specifically, we examine how such interactions influence the evolution of topics overtime in source and target communities. Our analysis found that (a) the size of a source community (the community that initiates interactions) and a target community (the community that receives interactions), (b) the stability of the source community, and (c) the volume of mentions from a source community to a target community predicts the level of influence one community has on another's discussion topics. We argue this has significant theoretical and practical implications. Lay Summary Political discussions online, especially those in the United States, seem to range between harmonious discussions of likeminded people and heated debates that end with few, if any, who have changed their minds. Researchers have often examined these balkanized/polarized situations by studying online communities as isolated echo chambers of opinion. Our study focuses on the interactions between online communities who have different worldviews. We examine communities engaged in the global refugee crisis. We consider how the inter-community interactions influence the agenda of the respective communities. Our longitudinal analysis on the one hand
Silventoinen, Karri; Jelenkovic, Aline; Sund, Reijo; Latvala, Antti; Honda, Chika; Inui, Fujio; Tomizawa, Rie; Watanabe, Mikio; Sakai, Norio; Rebato, Esther; Busjahn, Andreas; Tyler, Jessica; Hopper, John L.; Ordoñana, Juan R.; Sánchez-Romera, Juan F.; Colodro-Conde, Lucia; Calais-Ferreira, Lucas; Oliveira, Vinicius C.; Ferreira, Paulo H.; Medda, Emanuela; Nisticò, Lorenza; Toccaceli, Virgilia; Derom, Catherine A.; Vlietinck, Robert F.; Loos, Ruth J.F.; Siribaddana, Sisira H.; Hotopf, Matthew; Sumathipala, Athula; Rijsdijk, Fruhling; Duncan, Glen E.; Buchwald, Dedra; Tynelius, Per; Rasmussen, Finn; Tan, Qihua; Zhang, Dongfeng; Pang, Zengchang; Magnusson, Patrik K.E.; Pedersen, Nancy L.; Dahl Aslan, Anna; Hwang, Amie E.; Mack, Thomas M.; Krueger, Robert F; McGue, Matthew; Pahlen, Shandell; Brandt, Ingunn; Nilsen, Thomas S.; Harris, Jennifer R.; Martin, Nicholas G.; Medland, Sarah E.; Montgomery, Grant W.; Willemsen, Gonneke; Bartels, Meike; van Beijsterveldt, Catharina E.M.; Franz, Carol E.; Kremen, William S.; Lyons, Michael J.; Silberg, Judy L.; Maes, Hermine H.; Kandler, Christian; Nelson, Tracy L.; Whitfield, Keith E.; Corley, Robin P.; Huibregtse, Brooke M.; Gatz, Margaret; Butler, David A.; Tarnoki, Adam D; Tarnoki, David L; Park, Hang A.; Lee, Jooyeon; Lee, Soo Ji; Sung, Joohon; Yokoyama, Yoshie; Sørensen, Thorkild I.A.; Boomsma, Dorret I.; Kaprio, Jaakko
2020.
Genetic and environmental variation in educational attainment: an individual-based analysis of 28 twin cohorts.
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We investigated the heritability of educational attainment and how it differed between birth cohorts and cultural–geographic regions. A classical twin design was applied to pooled data from 28 cohorts representing 16 countries and including 193,518 twins with information on educational attainment at 25 years of age or older. Genetic factors explained the major part of individual differences in educational attainment (heritability: a2 = 0.43; 0.41–0.44), but also environmental variation shared by co-twins was substantial (c2 = 0.31; 0.30–0.33). The proportions of educational variation explained by genetic and shared environmental factors did not differ between Europe, North America and Australia, and East Asia. When restricted to twins 30 years or older to confirm finalized education, the heritability was higher in the older cohorts born in 1900–1949 (a2 = 0.44; 0.41–0.46) than in the later cohorts born in 1950–1989 (a2 = 0.38; 0.36–0.40), with a corresponding lower influence of common environmental factors (c2 = 0.31; 0.29–0.33 and c2 = 0.34; 0.32–0.36, respectively). In conclusion, both genetic and environmental factors shared by co-twins have an important influence on individual differences in educational attainment. The effect of genetic factors on educational attainment has decreased from the cohorts born before to those born after the 1950s.
Zhong, Tianwei; Zhang, Hai-Tao; Li, Yuanzheng; Liu, Lan; Lu, Renzhi
2020.
Bayesian Learning-Based Multi-Objective Distribution Power Network Reconfiguration.
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Ma, Jiantao; Rebholz, Casey M.; Braun, Kim V.E.; Reynolds, Lindsay M.; Aslibekyan, Stella; Xia, Rui; Biligowda, Niranjan G.; Huan, Tianxiao; Liu, Chunyu; Mendelson, Michael M.; Joehanes, Roby; Hu, Emily A.; Vitolins, Mara Z.; Wood, Alexis C.; Lohman, Kurt; Ochoa-Rosales, Carolina; Van Meurs, Joyce; Uitterlinden, André G.; Liu, Yongmei; Elhadad, Mohamed A.; Heier, Margit; Waldenberger, Melanie; Peters, Annette; Colicino, Elena; Whitsel, Eric A.; Baldassari, Antoine; Gharib, Sina A.; Sotoodehnia, Nona; Brody, Jennifer A.; Sitlani, Colleen M.; Tanaka, Toshiko; Hill, W. David; Corley, Janie; Deary, Ian J.; Zhang, Yan; Schöttker, Ben; Brenner, Hermann; Walker, Maura E.; Ye, Shumao; Nguyen, Steve; Pankow, James S; Demerath, Ellen W.; Zheng, Yinan; Hou, Lifang; Liang, Liming; Lichtenstein, Alice H.; Hu, Frank B.; Fornage, Myriam; Voortman, Trudy; Levy, Daniel
2020.
Whole blood DNA methylation signatures of diet are associated with cardiovascular disease risk factors and all-cause mortality.
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Background: DNA methylation patterns associated with habitual diet have not been well studied. Methods: Diet quality was characterized using a Mediterranean-style diet score and the Alternative Healthy Eating Index score. We conducted ethnicity-specific and trans-ethnic epigenome-wide association analyses for diet quality and leukocyte-derived DNA methylation at over 400 000 CpGs (cytosine-guanine dinucleotides) in 5 population-based cohorts including 6662 European ancestry, 2702 African ancestry, and 360 Hispanic ancestry participants. For diet-associated CpGs identified in epigenome-wide analyses, we conducted Mendelian randomization (MR) analysis to examine their relations to cardiovascular disease risk factors and examined their longitudinal associations with all-cause mortality. Results: We identified 30 CpGs associated with either Mediterranean-style diet score or Alternative Healthy Eating Index, or both, in European ancestry participants. Among these CpGs, 12 CpGs were significantly associated with all-cause mortality (Bonferroni corrected P<1.6×10-3). Hypermethylation of cg18181703 (SOCS3) was associated with higher scores of both Mediterranean-style diet score and Alternative Healthy Eating Index and lower risk for all-cause mortality (P=5.7×10-15). Ten additional diet-associated CpGs were nominally associated with all-cause mortality (P<0.05). MR analysis revealed 8 putatively causal associations for 6 CpGs with 4 cardiovascular disease risk factors (body mass index, triglycerides, high-density lipoprotein cholesterol concentrations, and type 2 diabetes mellitus; Bonferroni corrected MR P<4.5×10-4). For example, hypermethylation of cg11250194 (FADS2) was associated with lower triglyceride concentrations (MR, P=1.5×10-14).and hypermethylation of cg02079413 (SNORA54; NAP1L4) was associated with body mass index (corrected MR, P=1×10-6). Conclusions: Habitual diet quality was associated with differential peripheral leukocyte DNA methylation levels of 30 CpGs, most of which were also associated with multiple health outcomes, in European ancestry individuals. These findings demonstrate that integrative genomic analysis of dietary information may reveal molecular targets for disease prevention and treatment.
Justice, Anne E.; Chittoor, Geetha; Gondalia, Rahul; Melton, Phillip E.; Lim, Elise; Grove, Megan L.; Whitsel, Eric A.; Liu, Ching Ti; Cupples, L. Adrienne; Fernandez-Rhodes, Lindsay; Guan, Weihua; Bressler, Jan; Fornage, Myriam; Boerwinkle, Eric; Li, Yun; Demerath, Ellen W.; Heard-Costa, Nancy L.; Levy, Dan; Stewart, James D.; Baccarelli, Andrea A.; Hou, Lifang; Conneely, Karen N.; Mori, Trevor A.; Beilin, Lawrence J.; Huang, Rae Chi; Gordon-Larsen, Penny; Howard, Annie Green; North, Kari E.
2020.
Methylome-wide association study of central adiposity implicates genes involved in immune and endocrine systems.
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Aim: We conducted a methylome-wide association study to examine associations between DNA methylation in whole blood and central adiposity and body fat distribution, measured as waist circumference, waist-to-hip ratio and waist-to-height ratio adjusted for body mass index, in 2684 African-American adults in the Atherosclerosis Risk in Communities study. Materials & methods: We validated significantly associated cytosine-phosphate-guanine methylation sites (CpGs) among adults using the Women's Health Initiative and Framingham Heart Study participants (combined n = 5743) and generalized associations in adolescents from The Raine Study (n = 820). Results & conclusion: We identified 11 CpGs that were robustly associated with one or more central adiposity trait in adults and two in adolescents, including CpG site associations near TXNIP, ADCY7, SREBF1 and RAP1GAP2 that had not previously been associated with obesity-related traits.
Liu, Angela; Mazepa, Marshall; Davis, Elizabeth E; Johnson, Andrew; Antun, Ana G.; Farland, Andrew M.; Woods, Ryan R; Metjian, Ara D; Bagby, Kristin; Park, Yara; Raval, Jay S; de Ridder, Gustaaf; Gibson, Briana; Kasthuri, Raj S.; Liles, Darla K; Eubanks, Susan; Akwaa, Frank; Baumann Kreuziger, Lisa; Sadler, J. Evan; Sridharan, Meera; Go, Ronald; Kohli, Rahil; Upreti, Harsh Vardhan; McCrae, Keith R; Lim, Ming Y.; Zheng, X. Long; Kocher, Nicole K.; Gangaraju, Radhika; Cataland, Spero; Chaturvedi, Shruti
2019.
African American Race Is Associated with Decreased Relapse-Free Survival in Immune Thrombotic Thrombocytopenic Purpura.
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<p>Background: Immune thrombotic thrombocytopenic purpura (iTTP) is a potentially fatal hematologic disorder characterized by thrombocytopenia, microangiopathic hemolytic anemia, and ischemic organ impairment. The incidence of iTTP is higher among African-Americans (AA), however, differences in presentation and outcomes have not been fully investigated. In a multi-center cohort of patients with iTTP from the United States Thrombotic Microangiopathy (USTMA) Consortium, we tested the hypothesis that AA race is an independent predictor of poor outcomes including iTTP related mortality and relapse.</p>
McGowan, Craig J.; Biggerstaff, Matthew; Johansson, Michael A.; Apfeldorf, Karyn M.; Ben-Nun, Michal; Brooks, Logan C.; Convertino, Matteo; Erraguntla, Madhav; Farrow, David C.; Freeze, John; Ghosh, Saurav; Hyun, Sangwon; Kandula, Sasikiran; Lega, Joceline; Liu, Yang; Michaud, Nicholas; Morita, Haruka; Niemi, Jarad; Ramakrishnan, Naren; Ray, Evan L.; Reich, Nicholas G.; Riley, Pete; Shaman, Jeffrey; Tibshirani, Ryan J.; Vespignani, Alessandro; Zhang, Qian; Reed, Carrie; Rosenfeld, Roni; Ulloa, Nehemias; Will, Katie; Turtle, James; Bacon, David; Riley, Steven; Yang, Wan
2019.
Collaborative efforts to forecast seasonal influenza in the United States, 2015–2016.
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Since 2013, the Centers for Disease Control and Prevention (CDC) has hosted an annual influenza season forecasting challenge. The 2015–2016 challenge consisted of weekly probabilistic forecasts of multiple targets, including fourteen models submitted by eleven teams. Forecast skill was evaluated using a modified logarithmic score. We averaged submitted forecasts into a mean ensemble model and compared them against predictions based on historical trends. Forecast skill was highest for seasonal peak intensity and short-term forecasts, while forecast skill for timing of season onset and peak week was generally low. Higher forecast skill was associated with team participation in previous influenza forecasting challenges and utilization of ensemble forecasting techniques. The mean ensemble consistently performed well and outperformed historical trend predictions. CDC and contributing teams will continue to advance influenza forecasting and work to improve the accuracy and reliability of forecasts to facilitate increased incorporation into public health response efforts.
Total Results: 88